QUICK LINKS

  VTK - The Visualization Toolkit

  Cytoscape Homepage

  OGDF - Open Graph Drawing Framework

  Kitware, Inc.

  Tulip - Data Visualization Software

  Titan Toolkit

  AT&T Information Visualization

  Offical blog for troubleshooting

  CrystalPath



Download 3DScape

3DScape is consist of three parts: vtkCys plugin (put in Cytoscape/plugins folder), vtkCys library and vtk library (both need to be put in system path, e.g., C:\Windows\System32, /usr/lib, etc.). Once done, 3DScape is automatically loaded on startup of Cytoscape. Here are the files you need to download for each platform.

Platform vtkCys plugin vtk library vtkCys library Additional requirements
Windows 32bit (Installation Guide) Download Download Download Microsoft Visual C++ 2008 Redistributable Package (x86)
Windows 64bit (Installation Guide) Download Download Download Microsoft Visual C++ 2008 Redistributable Package (x64)
Ubuntu/Debian Linux 32bit *
(Installation Guide)
Download Download Download libjpeg62_6b1
libjpeg62-dev_6b1
libmysqlclient16_5.1.56
libnetcdf6_4.1.1
libvtk5.6
libvtk-java
Ubuntu/Debian Linux 64bit *
(Installation Guide)
Download Download Download libjpeg62_6b1
libjpeg62-dev_6b1
libmysqlclient16_5.1.56
libnetcdf6_4.1.1
libvtk5.6
libvtk-java
Mac OS X - Snow Leopard 10.6 **
(Installation Guide)
Download Download Download Unknown

Known Problems

* There is a glitch when render GLSL shaders under Ubuntu Linux, we suggest you try the Windows version if you cannot see the glowing effect.

** Due to the Mac OS X version are suffering rendering problems, we suggest you download the Windows version until the bug is fixed.

Post comments on my blog for troubleshooting.